data_7EGK
#
_model_server_result.job_id            quw4ACe0Vt46-CsGq3Cp8g 
_model_server_result.datetime_utc      '2025-06-20 06:43:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7egk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    7EGK 
#
_exptl.entry_id    7EGK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7EGK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EGK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 105 D CYS 105 1_555 B SG CYS 110 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 D SG CYS 105 F CYS 105 1_555 D SG CYS 110 F CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 F SG CYS 105 B CYS 105 1_555 F SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc1 A O PHE 110 A PHE 110 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc2 A O GLY 111 A GLY 111 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? 
metalc ? metalc3 A O ALA 112 A ALA 112 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc4 A O ILE 319 A ILE 319 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc5 A O SER 322 A SER 322 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc6 C O PHE 110 C PHE 110 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc7 C O GLY 111 C GLY 111 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? 
metalc ? metalc8 C O ALA 112 C ALA 112 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc9 C O ILE 319 C ILE 319 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc10 C O ALA 320 C ALA 320 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? 
metalc ? metalc11 C O SER 322 C SER 322 1_555 I NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc12 E O PHE 110 E PHE 110 1_555 K NA NA . E NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc13 E O GLY 111 E GLY 111 1_555 K NA NA . E NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? 
metalc ? metalc14 E O ALA 112 E ALA 112 1_555 K NA NA . E NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc15 E O ILE 319 E ILE 319 1_555 K NA NA . E NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc16 E O ALA 320 E ALA 320 1_555 K NA NA . E NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? 
metalc ? metalc17 E O SER 322 E SER 322 1_555 K NA NA . E NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     7EGK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NA A 1 401 402 NA NA . 
H 4 AMP D 1 201 201 AMP AMP . 
I 3 NA C 1 401 402 NA NA . 
J 4 AMP F 1 200 200 AMP AMP . 
K 3 NA E 1 401 402 NA NA . 
L 4 AMP B 1 201 202 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . H 4 114.017 138.369 152.442 1 37.37 ? P AMP 201 D 1 
HETATM 2 O O1P AMP . . . H 4 113.699 138.314 150.978 1 37.37 ? O1P AMP 201 D 1 
HETATM 3 O O2P AMP . . . H 4 113.099 137.557 153.306 1 37.37 ? O2P AMP 201 D 1 
HETATM 4 O O3P AMP . . . H 4 114.327 139.733 152.981 1 37.37 ? O3P AMP 201 D 1 
HETATM 5 O O5' AMP . . . H 4 115.403 137.602 152.517 1 37.37 ? O5' AMP 201 D 1 
HETATM 6 C C5' AMP . . . H 4 116.405 137.812 151.538 1 37.37 ? C5' AMP 201 D 1 
HETATM 7 C C4' AMP . . . H 4 117.318 136.622 151.439 1 37.37 ? C4' AMP 201 D 1 
HETATM 8 O O4' AMP . . . H 4 117.831 136.315 152.754 1 37.37 ? O4' AMP 201 D 1 
HETATM 9 C C3' AMP . . . H 4 116.659 135.332 150.989 1 37.37 ? C3' AMP 201 D 1 
HETATM 10 O O3' AMP . . . H 4 116.543 135.233 149.584 1 37.37 ? O3' AMP 201 D 1 
HETATM 11 C C2' AMP . . . H 4 117.552 134.266 151.599 1 37.37 ? C2' AMP 201 D 1 
HETATM 12 O O2' AMP . . . H 4 118.711 134.078 150.808 1 37.37 ? O2' AMP 201 D 1 
HETATM 13 C C1' AMP . . . H 4 117.969 134.924 152.909 1 37.37 ? C1' AMP 201 D 1 
HETATM 14 N N9 AMP . . . H 4 117.127 134.502 154.04 1 37.37 ? N9 AMP 201 D 1 
HETATM 15 C C8 AMP . . . H 4 115.999 135.099 154.444 1 37.37 ? C8 AMP 201 D 1 
HETATM 16 N N7 AMP . . . H 4 115.466 134.478 155.515 1 37.37 ? N7 AMP 201 D 1 
HETATM 17 C C5 AMP . . . H 4 116.272 133.457 155.817 1 37.37 ? C5 AMP 201 D 1 
HETATM 18 C C6 AMP . . . H 4 116.297 132.397 156.839 1 37.37 ? C6 AMP 201 D 1 
HETATM 19 N N6 AMP . . . H 4 115.328 132.305 157.772 1 37.37 ? N6 AMP 201 D 1 
HETATM 20 N N1 AMP . . . H 4 117.317 131.525 156.811 1 37.37 ? N1 AMP 201 D 1 
HETATM 21 C C2 AMP . . . H 4 118.285 131.604 155.892 1 37.37 ? C2 AMP 201 D 1 
HETATM 22 N N3 AMP . . . H 4 118.325 132.538 154.936 1 37.37 ? N3 AMP 201 D 1 
HETATM 23 C C4 AMP . . . H 4 117.365 133.478 154.846 1 37.37 ? C4 AMP 201 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           23 
#